histolab
v0.5.1
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Util
histolab
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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W
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Y
_
__call__() (BiggestTissueBoxMask method)
(BinaryMask method)
(CellularityScorer method)
(NucleiScorer method)
(RandomScorer method)
(Scorer method)
(TissueMask method)
A
adaptive_equalization() (in module histolab.filters.image_filters_functional)
AdaptiveEqualization (class in histolab.filters.image_filters)
aorta_tissue() (in module histolab.data)
apply_filters() (Tile method)
apply_mask_image() (in module histolab.util)
ApplyMaskImage (class in histolab.filters.image_filters)
B
base_mpp (Slide property)
BiggestTissueBoxMask (class in histolab.masks)
BinaryClosing (class in histolab.filters.morphological_filters)
BinaryDilation (class in histolab.filters.morphological_filters)
BinaryErosion (class in histolab.filters.morphological_filters)
BinaryFillHoles (class in histolab.filters.morphological_filters)
BinaryMask (class in histolab.masks)
BinaryOpening (class in histolab.filters.morphological_filters)
blue_filter() (in module histolab.filters.image_filters_functional)
blue_pen_filter() (in module histolab.filters.image_filters_functional)
BlueFilter (class in histolab.filters.image_filters)
BluePenFilter (class in histolab.filters.image_filters)
breast_tissue() (in module histolab.data)
breast_tissue_diagnostic_black_pen() (in module histolab.data)
breast_tissue_diagnostic_green_pen() (in module histolab.data)
breast_tissue_diagnostic_red_pen() (in module histolab.data)
C
calculate_tissue_mask() (Tile method)
canny_edges() (in module histolab.filters.image_filters_functional)
CannyEdges (class in histolab.filters.image_filters)
CellularityScorer (class in histolab.scorer)
cmu_small_region() (in module histolab.data)
Compose (class in histolab.filters.image_filters)
coords (Tile property)
D
dab_channel() (in module histolab.filters.image_filters_functional)
DABChannel (class in histolab.filters.image_filters)
dimensions (Slide property)
E
eosin_channel() (in module histolab.filters.image_filters_functional)
EosinChannel (class in histolab.filters.image_filters)
extract() (GridTiler method)
(RandomTiler method)
(ScoreTiler method)
extract_tile() (Slide method)
F
file_hash() (in module histolab.data)
Filter (class in histolab.filters.image_filters)
filter_entropy() (in module histolab.filters.image_filters_functional)
FilterEntropy (class in histolab.filters.image_filters)
FiltersComposition (class in histolab.filters.compositions)
G
Grays (class in histolab.filters.image_filters)
grays() (in module histolab.filters.image_filters_functional)
green_channel_filter() (in module histolab.filters.image_filters_functional)
green_filter() (in module histolab.filters.image_filters_functional)
green_pen_filter() (in module histolab.filters.image_filters_functional)
GreenChannelFilter (class in histolab.filters.image_filters)
GreenFilter (class in histolab.filters.image_filters)
GreenPenFilter (class in histolab.filters.image_filters)
GridTiler (class in histolab.tiler)
H
has_enough_tissue() (Tile method)
heart_tissue() (in module histolab.data)
hed_to_rgb() (in module histolab.filters.image_filters_functional)
HedToRgb (class in histolab.filters.image_filters)
hematoxylin_channel() (in module histolab.filters.image_filters_functional)
HematoxylinChannel (class in histolab.filters.image_filters)
histogram_equalization() (in module histolab.filters.image_filters_functional)
HistogramEqualization (class in histolab.filters.image_filters)
histolab.data
module
histolab.filters.compositions
module
histolab.filters.image_filters
module
histolab.filters.image_filters_functional
module
histolab.filters.morphological_filters
module
histolab.filters.morphological_filters_functional
module
histolab.masks
module
histolab.scorer
module
histolab.slide
module
histolab.tile
module
histolab.tiler
module
histolab.util
module
hysteresis_threshold() (in module histolab.filters.image_filters_functional)
hysteresis_threshold_mask() (in module histolab.filters.image_filters_functional)
HysteresisThreshold (class in histolab.filters.image_filters)
HysteresisThresholdMask (class in histolab.filters.image_filters)
I
ihc_breast() (in module histolab.data)
ihc_kidney() (in module histolab.data)
image (Tile property)
ImageFilter (class in histolab.filters.image_filters)
Invert (class in histolab.filters.image_filters)
invert() (in module histolab.filters.image_filters_functional)
K
kmeans_segmentation() (in module histolab.filters.image_filters_functional)
KmeansSegmentation (class in histolab.filters.image_filters)
L
lab_to_rgb() (in module histolab.filters.image_filters_functional)
LabToRgb (class in histolab.filters.image_filters)
Lambda (class in histolab.filters.image_filters)
lazyproperty() (in module histolab.util)
level (Tile property)
level_dimensions() (Slide method)
level_magnification_factor() (Slide method)
levels (Slide property)
local_equalization() (in module histolab.filters.image_filters_functional)
local_otsu_threshold() (in module histolab.filters.image_filters_functional)
LocalEqualization (class in histolab.filters.image_filters)
LocalOtsuThreshold (class in histolab.filters.image_filters)
locate_mask() (Slide method)
locate_tiles() (GridTiler method)
(RandomTiler method)
(ScoreTiler method)
M
method_dispatch() (in module histolab.util)
module
histolab.data
histolab.filters.compositions
histolab.filters.image_filters
histolab.filters.image_filters_functional
histolab.filters.morphological_filters
histolab.filters.morphological_filters_functional
histolab.masks
histolab.scorer
histolab.slide
histolab.tile
histolab.tiler
histolab.util
MorphologicalFilter (class in histolab.filters.morphological_filters)
N
name (Slide property)
np_to_pil() (in module histolab.util)
NucleiScorer (class in histolab.scorer)
O
otsu_threshold() (in module histolab.filters.image_filters_functional)
OtsuThreshold (class in histolab.filters.image_filters)
ovarian_tissue() (in module histolab.data)
P
processed_path (Slide property)
properties (Slide property)
prostate_tissue() (in module histolab.data)
R
rag_threshold() (in module histolab.filters.image_filters_functional)
RagThreshold (class in histolab.filters.image_filters)
random_choice_true_mask2d() (in module histolab.util)
RandomScorer (class in histolab.scorer)
RandomTiler (class in histolab.tiler)
rectangle_to_mask() (in module histolab.util)
red_filter() (in module histolab.filters.image_filters_functional)
red_pen_filter() (in module histolab.filters.image_filters_functional)
RedFilter (class in histolab.filters.image_filters)
RedPenFilter (class in histolab.filters.image_filters)
region_coordinates() (in module histolab.util)
regions_from_binary_mask() (in module histolab.util)
regions_to_binary_mask() (in module histolab.util)
remove_small_objects() (in module histolab.filters.morphological_filters_functional)
RemoveSmallHoles (class in histolab.filters.morphological_filters)
RemoveSmallObjects (class in histolab.filters.morphological_filters)
resampled_array() (Slide method)
rgb_to_hed() (in module histolab.filters.image_filters_functional)
rgb_to_hsv() (in module histolab.filters.image_filters_functional)
rgb_to_lab() (in module histolab.filters.image_filters_functional)
rgb_to_od() (in module histolab.filters.image_filters_functional)
RgbToGrayscale (class in histolab.filters.image_filters)
RgbToHed (class in histolab.filters.image_filters)
RgbToHsv (class in histolab.filters.image_filters)
RgbToLab (class in histolab.filters.image_filters)
RgbToOd (class in histolab.filters.image_filters)
S
save() (Tile method)
scale_coordinates() (in module histolab.util)
scaled_image() (Slide method)
scaled_images() (SlideSet method)
Scorer (class in histolab.scorer)
ScoreTiler (class in histolab.tiler)
show() (Slide method)
Slide (class in histolab.slide)
slides_stats (SlideSet property)
SlideSet (class in histolab.slide)
stretch_contrast() (in module histolab.filters.image_filters_functional)
StretchContrast (class in histolab.filters.image_filters)
T
threshold_to_mask() (in module histolab.util)
thumbnail (Slide property)
thumbnails() (SlideSet method)
Tile (class in histolab.tile)
tile_size (GridTiler property)
(ScoreTiler property)
tissue_mask (Tile property)
tissue_mask_filters (FiltersComposition property)
tissue_ratio (Tile property)
TissueMask (class in histolab.masks)
ToPILImage (class in histolab.filters.image_filters)
total_slides (SlideSet property)
W
watershed_segmentation() (in module histolab.filters.morphological_filters_functional)
WatershedSegmentation (class in histolab.filters.morphological_filters)
WhiteTopHat (class in histolab.filters.morphological_filters)
Y
yen_threshold() (in module histolab.filters.image_filters_functional)
YenThreshold (class in histolab.filters.image_filters)
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